{
  "_id": "6ae5988595ca2370cc8d0daf",
  "Package": "harmorust",
  "Title": "'Rust' Native Kernels for 'Harmony' Single-Cell Integration",
  "Version": "0.1.0",
  "Authors@R": "person(\ngiven = \"Nebil\",\nfamily = \"Ibrahim\",\nemail = \"nebil080298@gmail.com\",\nrole = c(\"aut\", \"cre\")\n)",
  "Description": "'Rust' reimplementation of the 'Harmony' integration loop\n(soft k-means, diversity penalty, mixture-of-experts ridge)\nwith the same RunHarmony() signature used by the immunogenomics\n'Harmony' R package. Designed to sit next to 'seurust':\n'Seurat'/'seurust' produce the PCA embedding, 'harmorust'\ncorrects it. Installing from source builds the 'harmorust' CLI\nwith Cargo and places it in the package 'bin' directory.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/NebilI/harmony-rs,\nhttps://NebilI.r-universe.dev/harmorust",
  "BugReports": "https://github.com/NebilI/harmony-rs/issues",
  "Encoding": "UTF-8",
  "SystemRequirements": "Cargo (Rust's package manager), rustc (>= 1.89)",
  "Config/testthat/edition": "3",
  "Config/runiverse/republish": "2026-10-27",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "Config/pak/sysreqs": "libclang-dev",
  "Repository": "https://nebili.r-universe.dev",
  "Date/Publication": "2026-10-27 22:49:06 UTC",
  "RemoteUrl": "https://github.com/NebilI/harmony-rs",
  "RemoteRef": "v0.1.0",
  "RemoteSha": "40eb0ad6bc9304592f332ce04d0f8f70f0e6fa12",
  "RemoteSubdir": "r/harmorust",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-31 07:16:34 UTC",
    "User": "root"
  },
  "Author": "Nebil Ibrahim [aut, cre]",
  "Maintainer": "Nebil Ibrahim <nebil080298@gmail.com>",
  "_user": "nebili",
  "_type": "src",
  "_file": "harmorust_0.1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/aec6861652ebef31a20ba9374affd09eeec8cb26d0809cf5158a8b2d2b01d698",
  "_filesize": 176666,
  "_sha256": "aec6861652ebef31a20ba9374affd09eeec8cb26d0809cf5158a8b2d2b01d698",
  "_expires": "2027-02-08T07:28:03.000Z",
  "_created": "2026-10-31T07:16:34.000Z",
  "_published": "2026-10-31T07:28:05.031Z",
  "_upstream": "https://github.com/NebilI/harmony-rs",
  "_status": "success",
  "_maintainer": {
    "name": "Nebil Ibrahim",
    "email": "nebil080298@gmail.com",
    "login": "nebili",
    "description": "",
    "uuid": 38141463
  },
  "_jobs": [
    {
      "job": 124475266453,
      "time": 193,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "13034029359"
    },
    {
      "job": 124475266430,
      "time": 171,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "13034243664"
    },
    {
      "job": 124475266369,
      "time": 111,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "13035110523"
    },
    {
      "job": 124475266411,
      "time": 130,
      "config": "macos-release-arm64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13034886499"
    },
    {
      "job": 124474417424,
      "time": 260,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "13034393061"
    },
    {
      "job": 124475266433,
      "time": 175,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 124475266426,
      "time": 73,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 124475266396,
      "time": 78,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 124475266444,
      "time": 80,
      "config": "windows-release-x86_64",
      "r": "4.6.2",
      "check": "FAIL",
      "artifact": ""
    }
  ],
  "_buildurl": "https://github.com/r-universe/nebili/actions/runs/41179689517",
  "_commit": {
    "id": "40eb0ad6bc9304592f332ce04d0f8f70f0e6fa12",
    "author": "Nebil Ibrahim <nebil080298@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #9 from NebilI/cursor/prepare-public-repo-35c7\n\nPrepare harmony-rs to be made public for r-universe",
    "time": 1793141346
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.2",
      "role": "Depends"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "Seurat",
      "version": ">= 4.1.1",
      "role": "Suggests"
    },
    {
      "package": "SingleCellExperiment",
      "role": "Suggests"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "seurust",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "nebili",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-41",
      "n": 11
    },
    {
      "week": "2026-43",
      "n": 6
    },
    {
      "week": "2026-44",
      "n": 5
    }
  ],
  "_tags": [
    {
      "name": "v0.1.0",
      "date": "2026-10-27"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "cursoragent",
      "count": 24,
      "uuid": 199161495
    },
    {
      "user": "nebili",
      "count": 12,
      "uuid": 38141463
    }
  ],
  "_userbio": {
    "uuid": 38141463,
    "type": "user",
    "name": "NebilI",
    "followers": 0
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/harmorust"
  },
  "_devurl": "https://github.com/nebili/harmony-rs",
  "_cargo": true,
  "_topics": [
    "rust",
    "cargo"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/harmorust.html",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_cranurl": false,
  "_exports": [
    "harmony_options",
    "HarmonyConvergencePlot",
    "RunHarmony"
  ],
  "_help": [
    {
      "page": "harmorust-package",
      "title": "Rust Native Kernels for Harmony Single-Cell Integration",
      "topics": [
        "harmorust-package",
        "harmorust"
      ]
    },
    {
      "page": "harmony_options",
      "title": "Advanced Harmony options",
      "topics": [
        "harmony_options"
      ]
    },
    {
      "page": "HarmonyConvergencePlot",
      "title": "Plot Harmony objective over clustering steps",
      "topics": [
        "HarmonyConvergencePlot"
      ]
    },
    {
      "page": "RunHarmony",
      "title": "Run Harmony with the harmorust kernel",
      "topics": [
        "RunHarmony",
        "RunHarmony.default",
        "RunHarmony.Seurat",
        "RunHarmony.SingleCellExperiment"
      ]
    }
  ],
  "_readme": "https://github.com/NebilI/harmony-rs/raw/v0.1.0/r/harmorust/README.md",
  "_rundeps": [
    "jsonlite"
  ],
  "_score": 2.1760912590556813,
  "_indexed": true,
  "_nocasepkg": "harmorust",
  "_universes": [
    "nebili"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-10-31T07:20:05.000Z",
      "distro": "resolute",
      "commit": "40eb0ad6bc9304592f332ce04d0f8f70f0e6fa12",
      "fileid": "https://r2.ropensci.org/bbb085f313e1074e1d05daf4ed7ccee46a34d7f0760cc3693150ccdf1246fb38",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nebili/actions/runs/41179689517"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-10-31T07:19:44.000Z",
      "distro": "resolute",
      "commit": "40eb0ad6bc9304592f332ce04d0f8f70f0e6fa12",
      "fileid": "https://r2.ropensci.org/644a93f6515329b39ccb4d87f43b0b0ffdcc95c733405e496182fe4462f457e3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nebili/actions/runs/41179689517"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-10-31T07:27:05.000Z",
      "commit": "40eb0ad6bc9304592f332ce04d0f8f70f0e6fa12",
      "fileid": "https://r2.ropensci.org/5df93058cd7fc48bf4663d00ff049480ec17545d4e027c377e81af7931dacb76",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nebili/actions/runs/41179689517"
    },
    {
      "r": "4.6.2",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-10-31T07:27:28.000Z",
      "commit": "40eb0ad6bc9304592f332ce04d0f8f70f0e6fa12",
      "fileid": "https://r2.ropensci.org/d4ab80bb931d4432fb96a359f4df9c9e6facd4cf698f2356537d7fb24c8bed92",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nebili/actions/runs/41179689517"
    }
  ]
}